PH01002414G0030's details annotation
1.Annotation
ICBR annotation: histone-lysine N-methyltransferase, putative, expressed
Blast result AT2G35160 : 1.30E-69
Blast annotation: SU(VAR)3-9 homolog 5
2.Location
Scaffold: PH01002414
Strand: +
| Region | Start | End |
| gene | 7035 | 9449 |
| mRNA | 7035 | 9449 |
| exon | 7035 | 9252 |
| exon | 9305 | 9449 |
| CDS | 7396 | 9252 |
| CDS | 9305 | 9316 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001573 | protein refolding, histone_lysine_methylation cellular protein metabolic process, histone_binding zinc ion binding, histone-lysine N-methyltransferase activity, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02182.16 | SAD_SRA | 333 | 477 |
| PF05033.15 | Pre-SET | 502 | 598 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
| GO:0018024 | histone-lysine N-methyltransferase activity |
| GO:0034968 | histone lysine methylation |
| GO:0042393 | histone binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.