PH01002416G0140's details annotation
1.Annotation
ICBR annotation: citrate synthase, putative, expressed
Blast result AT2G44350 : 2.00E-132
Blast annotation: Citrate synthase family protein
2.Location
Scaffold: PH01002416
Strand: -
| Region | Start | End |
| gene | 91460 | 100528 |
| mRNA | 91460 | 100528 |
| exon | 91460 | 92619 |
| exon | 92703 | 92754 |
| exon | 92879 | 92952 |
| exon | 93039 | 93089 |
| exon | 93177 | 93284 |
| exon | 93554 | 93655 |
| exon | 93893 | 93979 |
| exon | 94795 | 94837 |
| exon | 95209 | 95286 |
| exon | 95374 | 95423 |
| exon | 95636 | 95814 |
| exon | 96980 | 97555 |
| exon | 97827 | 97890 |
| exon | 98141 | 98254 |
| exon | 98733 | 98798 |
| exon | 98898 | 98963 |
| exon | 99591 | 99632 |
| exon | 99796 | 99858 |
| exon | 99957 | 100528 |
| CDS | 92527 | 92619 |
| CDS | 92703 | 92754 |
| CDS | 92879 | 92952 |
| CDS | 93039 | 93089 |
| CDS | 93177 | 93284 |
| CDS | 93554 | 93655 |
| CDS | 93893 | 93979 |
| CDS | 94795 | 94837 |
| CDS | 95209 | 95286 |
| CDS | 95374 | 95423 |
| CDS | 95636 | 95814 |
| CDS | 96980 | 97555 |
| CDS | 97827 | 97890 |
| CDS | 98141 | 98254 |
| CDS | 98733 | 98798 |
| CDS | 98898 | 98963 |
| CDS | 99591 | 99632 |
| CDS | 99796 | 99858 |
| CDS | 99957 | 100007 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00285.20 | Citrate_synt | 78 | 157 |
| PF00285.20 | Citrate_synt | 380 | 449 |
| PF00285.20 | Citrate_synt | 450 | 637 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | citrate synthase [EC:2.3.3.1] | ko00020 | K01647 |
| Glyoxylate and dicarboxylate metabolism | citrate synthase [EC:2.3.3.1] | ko00630 | K01647 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006099 | tricarboxylic acid cycle |
| GO:0044262 | cellular carbohydrate metabolic process |
| GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.