PH01002442G0260's details annotation
1.Annotation
ICBR annotation: calcium-binding EF hand family protein, putative, expressed
Blast result AT5G08580 : 2.00E-103
Blast annotation: Calcium-binding EF hand family protein
2.Location
Scaffold: PH01002442
Strand: -
| Region | Start | End |
| gene | 179798 | 181711 |
| mRNA | 179798 | 181711 |
| exon | 179798 | 180343 |
| exon | 180589 | 180685 |
| exon | 180779 | 180943 |
| exon | 181367 | 181711 |
| CDS | 180227 | 180343 |
| CDS | 180589 | 180685 |
| CDS | 180779 | 180943 |
| CDS | 181367 | 181497 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001369 | GT2 GlycosylTransferases N-Glycan_biosynthesis regulation of Rab GTPase activity, nucleosome assembly, |
| coexpression network | CFinderM001518 | SNARE_interactions_in_vesicular_transport protein phosphatase type 2A complex, SNAP receptor activity, protein phosphatase type 2A regulator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13202.5 | EF-hand_5 | 214 | 235 |
| PF13833.5 | EF-hand_8 | 254 | 275 |
| PF10591.8 | SPARC_Ca_bdg | 281 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.