Annotation of co-expression genes

PH01002444G0270's details annotation

1.Annotation

ICBR annotation: transferase family protein, putative, expressed

Blast result AT1G28680 : 7.80E-39
Blast annotation: HXXXD-type acyl-transferase family protein

2.Location

Scaffold: PH01002444
Strand: +

RegionStartEnd
gene222620225372
mRNA222620225372
exon222620223170
exon223295225372
CDS222727223170
CDS223295224140

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000051Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
protein neddylation,
steroid biosynthetic process,
Flavonoid_biosynthesis
cellular protein modification process,
transferase activity, transferring acyl groups other than amino-acyl groups,
small protein activating enzyme activity,
3-beta-hydroxy-delta5-steroid dehydrogenase activity,
coexpression networkCFinderM000654protein neddylation,
RLK-Pelle_CR4L (from iTAK)
cellular protein modification process,
Ubiquitin_mediated_proteolysis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02458.14Transferase8405

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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