PH01002445G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G19340 : 4.00E-143
Blast annotation: Protein of unknown function (DUF3754)
2.Location
Scaffold: PH01002445
Strand: +
| Region | Start | End |
| gene | 31274 | 38543 |
| mRNA | 31274 | 38543 |
| exon | 31274 | 31425 |
| exon | 31783 | 31847 |
| exon | 33001 | 33358 |
| exon | 34859 | 34963 |
| exon | 35045 | 35116 |
| exon | 35363 | 35475 |
| exon | 35570 | 35704 |
| exon | 35786 | 35854 |
| exon | 35956 | 36043 |
| exon | 36149 | 36220 |
| exon | 36299 | 36399 |
| exon | 36437 | 36475 |
| exon | 36678 | 36795 |
| exon | 36888 | 36947 |
| exon | 37673 | 37783 |
| exon | 38504 | 38543 |
| CDS | 31366 | 31425 |
| CDS | 31783 | 31847 |
| CDS | 33001 | 33358 |
| CDS | 34859 | 34963 |
| CDS | 35045 | 35116 |
| CDS | 35363 | 35475 |
| CDS | 35570 | 35704 |
| CDS | 35786 | 35854 |
| CDS | 35956 | 36043 |
| CDS | 36149 | 36220 |
| CDS | 36299 | 36399 |
| CDS | 36437 | 36475 |
| CDS | 36678 | 36795 |
| CDS | 36888 | 36947 |
| CDS | 37673 | 37783 |
| CDS | 38504 | 38512 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12576.7 | DUF3754 | 318 | 452 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.