PH01002454G0130's details annotation
1.Annotation
ICBR annotation: BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
Blast result AT5G47800 : 3.00E-137
Blast annotation: Phototropic-responsive NPH3 family protein
2.Location
Scaffold: PH01002454
Strand: -
| Region | Start | End |
| gene | 88163 | 93552 |
| mRNA | 88163 | 93552 |
| exon | 88163 | 88710 |
| exon | 88807 | 89577 |
| exon | 90087 | 90488 |
| exon | 90974 | 91036 |
| exon | 92356 | 92425 |
| exon | 92578 | 93552 |
| CDS | 88273 | 88710 |
| CDS | 88807 | 89577 |
| CDS | 90087 | 90488 |
| CDS | 90974 | 91036 |
| CDS | 92356 | 92425 |
| CDS | 92578 | 92636 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000115 | Dof Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000158 | G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) microtubule, protein complex, HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) Phagosome protein polymerization, microtubule-based process, DNA binding, structural constituent of cytoskeleton, chromatin binding, |
| coexpression network | CFinderM000162 | CAMTA Transcription_Regulator(from PlantTFDB) AUX/IAA Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) AGC_RSK-2 (from iTAK) zinc_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03000.13 | NPH3 | 221 | 480 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.