PH01002462G0030's details annotation
1.Annotation
ICBR annotation: reticulon domain containing protein, putative, expressed
Blast result AT4G11220 : 1.70E-55
Blast annotation: VIRB2-interacting protein 2
2.Location
Scaffold: PH01002462
Strand: -
| Region | Start | End |
| gene | 15103 | 19071 |
| mRNA | 15103 | 19071 |
| exon | 15103 | 15278 |
| exon | 15366 | 15435 |
| exon | 15524 | 15665 |
| exon | 15743 | 15923 |
| exon | 16425 | 16503 |
| exon | 16650 | 16690 |
| exon | 18574 | 19071 |
| CDS | 15109 | 15278 |
| CDS | 15366 | 15435 |
| CDS | 15524 | 15665 |
| CDS | 15743 | 15923 |
| CDS | 16425 | 16503 |
| CDS | 16650 | 16690 |
| CDS | 18574 | 18796 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02453.16 | Reticulon | 116 | 270 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.