PH01002465G0310's details annotation
1.Annotation
ICBR annotation: OsFBT11 - F-box and tubby domain containing protein, expressed
Blast result AT2G47900 : 6.00E-139
Blast annotation: tubby like protein 3
2.Location
Scaffold: PH01002465
Strand: +
| Region | Start | End |
| gene | 216459 | 220589 |
| mRNA | 216459 | 220589 |
| exon | 216459 | 217598 |
| exon | 218624 | 218711 |
| exon | 218784 | 218913 |
| exon | 219035 | 219152 |
| exon | 219634 | 219666 |
| exon | 219741 | 220589 |
| CDS | 217263 | 217598 |
| CDS | 218624 | 218711 |
| CDS | 218784 | 218913 |
| CDS | 219035 | 219152 |
| CDS | 219634 | 219666 |
| CDS | 219741 | 220247 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 48 | 98 |
| PF01167.17 | Tub | 112 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.