PH01002470G0090's details annotation
1.Annotation
ICBR annotation: 1,4-alpha-glucan-branching enzyme, putative, expressed
Blast result AT3G20440 : 6.00E-160
Blast annotation: Alpha amylase family protein
2.Location
Scaffold: PH01002470
Strand: +
| Region | Start | End |
| gene | 76678 | 82947 |
| mRNA | 76678 | 82947 |
| exon | 76678 | 79889 |
| exon | 80221 | 80292 |
| exon | 80391 | 80455 |
| exon | 80498 | 80556 |
| exon | 80858 | 81551 |
| exon | 82269 | 82441 |
| exon | 82510 | 82599 |
| exon | 82897 | 82947 |
| CDS | 79570 | 79889 |
| CDS | 80221 | 80292 |
| CDS | 80391 | 80455 |
| CDS | 80498 | 80556 |
| CDS | 80858 | 81551 |
| CDS | 82269 | 82441 |
| CDS | 82510 | 82599 |
| CDS | 82897 | 82944 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000771 | outer membrane, CBM48 Carbohydrate-Binding_Modules GH13 Glycoside_Hydrolases cysteine biosynthetic process from serine, Sulfur_metabolism cysteine synthase activity, Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate-Binding_Modules | CBM48 |
| Glycoside_Hydrolases | GH13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.