PH01002478G0050's details annotation
1.Annotation
ICBR annotation: dimethyladenosine transferase, putative, expressed
Blast result AT5G66360 : 4.50E-82
Blast annotation: Ribosomal RNA adenine dimethylase family protein
2.Location
Scaffold: PH01002478
Strand: -
| Region | Start | End |
| gene | 26771 | 29138 |
| mRNA | 26771 | 29138 |
| exon | 26771 | 28123 |
| exon | 28219 | 29138 |
| CDS | 27407 | 28123 |
| CDS | 28219 | 28569 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00398.19 | RrnaAD | 37 | 255 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000154 | rRNA modification |
| GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
| GO:0006364 | rRNA processing |
| GO:0008649 | rRNA methyltransferase activity |
| GO:0016433 | rRNA (adenine) methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.