PH01002493G0240's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT1G79570 : 4.60E-66
Blast annotation: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
2.Location
Scaffold: PH01002493
Strand: +
| Region | Start | End |
| gene | 143941 | 148027 |
| mRNA | 143941 | 148027 |
| exon | 143941 | 144984 |
| exon | 145135 | 145256 |
| exon | 145353 | 146819 |
| exon | 146909 | 146989 |
| exon | 147144 | 148027 |
| CDS | 144045 | 144984 |
| CDS | 145135 | 145256 |
| CDS | 145353 | 146819 |
| CDS | 146909 | 146989 |
| CDS | 147144 | 147179 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001574 | SBP Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 181 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.