PH01002498G0270's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT5G60690 : 0.00E+00
Blast annotation: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01002498
Strand: -
| Region | Start | End |
| gene | 161599 | 170542 |
| mRNA | 161599 | 170542 |
| exon | 161599 | 162208 |
| exon | 162761 | 162910 |
| exon | 163220 | 163325 |
| exon | 163516 | 163868 |
| exon | 164128 | 164295 |
| exon | 164524 | 164604 |
| exon | 165025 | 165213 |
| exon | 165673 | 165853 |
| exon | 165944 | 166050 |
| exon | 166553 | 166627 |
| exon | 166732 | 166887 |
| exon | 166994 | 167077 |
| exon | 167189 | 167302 |
| exon | 167753 | 167848 |
| exon | 167938 | 168028 |
| exon | 168136 | 168218 |
| exon | 168335 | 168494 |
| exon | 168803 | 170542 |
| CDS | 162062 | 162208 |
| CDS | 162761 | 162910 |
| CDS | 163220 | 163325 |
| CDS | 163516 | 163868 |
| CDS | 164128 | 164295 |
| CDS | 164524 | 164604 |
| CDS | 165025 | 165213 |
| CDS | 165673 | 165853 |
| CDS | 165944 | 166050 |
| CDS | 166553 | 166627 |
| CDS | 166732 | 166887 |
| CDS | 166994 | 167077 |
| CDS | 167189 | 167302 |
| CDS | 167753 | 167848 |
| CDS | 167938 | 168028 |
| CDS | 168136 | 168218 |
| CDS | 168335 | 168494 |
| CDS | 168803 | 169038 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR166 | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 27 | 84 |
| PF01852.18 | START | 164 | 370 |
| PF08670.10 | MEKHLA | 715 | 857 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.