Annotation of co-expression genes

PH01002503G0190's details annotation

1.Annotation

ICBR annotation: calreticulin precursor protein, putative, expressed

Blast result AT5G61790 : 0.00E+00
Blast annotation: calnexin 1

2.Location

Scaffold: PH01002503
Strand: +

RegionStartEnd
gene116564120713
mRNA116564120713
exon116564117191
exon117285117354
exon118339119474
exon119578119649
exon119742119858
exon119941120713
CDS117123117191
CDS117285117354
CDS118339119474
CDS119578119649
CDS119742119858
CDS119941120090

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001232intracellular protein transport,
small GTPase mediated signal transduction,
GTP binding,
intracellular,
membrane coat,
endoplasmic reticulum,
protein transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00262.17Calreticulin25381

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein processing in endoplasmic reticulumcalnexinko04141K08054
Phagosomecalnexinko04145K08054

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005783endoplasmic reticulum
GO:0006457protein folding
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.