PH01002508G0240's details annotation
1.Annotation
ICBR annotation: heat shock factor-binding protein 1, putative, expressed
Blast result AT4G15802 : 2.50E-16
Blast annotation: heat shock factor binding protein
2.Location
Scaffold: PH01002508
Strand: -
| Region | Start | End |
| gene | 151553 | 154643 |
| mRNA | 151553 | 154643 |
| exon | 151553 | 152381 |
| exon | 153095 | 153118 |
| exon | 153246 | 153299 |
| exon | 153789 | 154643 |
| CDS | 152241 | 152381 |
| CDS | 153095 | 153118 |
| CDS | 153246 | 153299 |
| CDS | 153789 | 153824 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000169 | peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity Galactose_metabolism Peroxisome Pentose_and_glucuronate_interconversions Pyruvate_metabolism Glycerolipid_metabolism Fructose_and_mannose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.