PH01002513G0060's details annotation
1.Annotation
ICBR annotation: bZIP transcription factor family protein, putative, expressed
Blast result AT2G42380 : 2.90E-52
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein
2.Location
Scaffold: PH01002513
Strand: -
| Region | Start | End |
| gene | 25424 | 28168 |
| mRNA | 25424 | 28168 |
| exon | 25424 | 25961 |
| exon | 26201 | 26327 |
| exon | 26532 | 26622 |
| exon | 27213 | 28168 |
| CDS | 25807 | 25961 |
| CDS | 26201 | 26327 |
| CDS | 26532 | 26622 |
| CDS | 27213 | 27598 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 125 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.