Annotation of co-expression genes

PH01002515G0010's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Blast result AT5G10290 : 0.00E+00
Blast annotation: leucine-rich repeat transmembrane protein kinase family protein

2.Location

Scaffold: PH01002515
Strand: +

RegionStartEnd
gene554912007
mRNA554912007
exon55497563
exon81478290
exon85748639
exon87268796
exon89209060
exon94119752
exon1008310477
exon1060512007
CDS74787563
CDS81478290
CDS85748639
CDS87268796
CDS89209060
CDS94119752
CDS1008310477
CDS1060510919

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001262RLK-Pelle_LRR-II (from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
nucleotide kinase activity,
phosphotransferase activity, phosphate group as acceptor,
nucleobase-containing compound kinase activity,
nucleotide_phosphorylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_82884
PF00069.24Pkinase197468

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.