Annotation of co-expression genes

PH01002518G0150's details annotation

1.Annotation

ICBR annotation: peroxidase precursor, putative, expressed

Blast result AT5G05340 : 2.00E-107
Blast annotation: Peroxidase superfamily protein

2.Location

Scaffold: PH01002518
Strand: -

RegionStartEnd
gene8105382698
mRNA8105382698
exon8105381750
exon8185182016
exon8212582301
exon8249282698
CDS8135681750
CDS8185182016
CDS8212582301
CDS8249282617

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000683Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00141.22peroxidase40276

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phenylalanine metabolismperoxidase [EC:1.11.1.7]ko00360K00430
Phenylpropanoid biosynthesisperoxidase [EC:1.11.1.7]ko00940K00430
Methane metabolismperoxidase [EC:1.11.1.7]ko00680K00430

10.Gene Ontology

GO AccessionGO Annotation
GO:0004601peroxidase activity
GO:0006979response to oxidative stress
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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