PH01002522G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G18350 : 0.00E+00
Blast annotation: Plant protein of unknown function (DUF639)
2.Location
Scaffold: PH01002522
Strand: -
| Region | Start | End |
| gene | 139396 | 151825 |
| mRNA | 139396 | 151825 |
| exon | 139396 | 139527 |
| exon | 139951 | 140194 |
| exon | 141495 | 141560 |
| exon | 143513 | 143625 |
| exon | 146142 | 146709 |
| exon | 146966 | 147143 |
| exon | 147323 | 147465 |
| exon | 147738 | 147764 |
| exon | 148850 | 148906 |
| exon | 149222 | 149391 |
| exon | 149551 | 149785 |
| exon | 150795 | 151825 |
| CDS | 139522 | 139527 |
| CDS | 139951 | 140194 |
| CDS | 141495 | 141560 |
| CDS | 143513 | 143625 |
| CDS | 146142 | 146709 |
| CDS | 146966 | 147143 |
| CDS | 147323 | 147465 |
| CDS | 147738 | 147764 |
| CDS | 148850 | 148906 |
| CDS | 149222 | 149391 |
| CDS | 149551 | 149785 |
| CDS | 150795 | 151003 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000655 | cell communication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04842.11 | DUF639 | 490 | 565 |
| PF04842.11 | DUF639 | 590 | 670 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.