PH01002523G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G04885 : 6.30E-75
Blast annotation: PCF11P-similar protein 4
2.Location
Scaffold: PH01002523
Strand: +
| Region | Start | End |
| gene | 59803 | 66112 |
| mRNA | 59803 | 66112 |
| exon | 59803 | 60663 |
| exon | 60735 | 60797 |
| exon | 61693 | 62058 |
| exon | 62249 | 62362 |
| exon | 62909 | 63610 |
| exon | 64502 | 65443 |
| exon | 65554 | 66112 |
| CDS | 60337 | 60663 |
| CDS | 60735 | 60797 |
| CDS | 61693 | 62058 |
| CDS | 62249 | 62362 |
| CDS | 62909 | 63610 |
| CDS | 64502 | 65443 |
| CDS | 65554 | 66069 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001842 | ATP synthesis coupled proton transport, Propanoate_metabolism Carbon_fixation_pathways_in_prokaryotes hydrogen ion transporting ATP synthase activity, rotational mechanism, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04818.12 | CTD_bind | 136 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | pre-mRNA cleavage complex 2 protein Pcf11 | ko03015 | K14400 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.