PH01002537G0050's details annotation
1.Annotation
ICBR annotation: IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed
Blast result AT1G10500 : 3.40E-52
Blast annotation: chloroplast-localized ISCA-like protein
2.Location
Scaffold: PH01002537
Strand: +
| Region | Start | End |
| gene | 17951 | 21691 |
| mRNA | 17951 | 21691 |
| exon | 17951 | 19478 |
| exon | 20611 | 20844 |
| exon | 21304 | 21691 |
| CDS | 19337 | 19478 |
| CDS | 20611 | 20844 |
| CDS | 21304 | 21479 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000585 | Rab GDP-dissociation inhibitor activity, iron-sulfur cluster assembly, structural molecule activity, iron-sulfur cluster binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01521.19 | Fe-S_biosyn | 64 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0016226 | iron-sulfur cluster assembly |
| GO:0051536 | iron-sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.