Annotation of co-expression genes

PH01002540G0220's details annotation

1.Annotation

ICBR annotation: heat shock protein binding protein, putative, expressed

Blast result AT1G79940 : 1.00E-156
Blast annotation: DnaJ / Sec63 Brl domains-containing protein

2.Location

Scaffold: PH01002540
Strand: +

RegionStartEnd
gene136165144362
mRNA136165144362
exon136165139305
exon139408139503
exon141331141451
exon141554141660
exon141759141976
exon142970143147
exon143241143360
exon144026144362
CDS139120139305
CDS139408139503
CDS141331141451
CDS141554141660
CDS141759141976
CDS142970143147
CDS143241143360
CDS144026144148

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00226.30DnaJ100161
PF02889.15Sec63222349

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exporttranslocation protein SEC63ko03060K09540
Protein processing in endoplasmic reticulumtranslocation protein SEC63ko04141K09540

10.Gene Ontology

GO AccessionGO Annotation
GO:0008565protein transporter activity
GO:0031204posttranslational protein targeting to membrane, translocation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.