PH01002544G0170's details annotation
1.Annotation
ICBR annotation: cyclin-T1-4, putative, expressed
Blast result AT5G45190 : 6.00E-114
Blast annotation: Cyclin family protein
2.Location
Scaffold: PH01002544
Strand: +
| Region | Start | End |
| gene | 132727 | 146049 |
| mRNA | 132727 | 146049 |
| exon | 132727 | 133080 |
| exon | 134810 | 134891 |
| exon | 135695 | 135957 |
| exon | 137534 | 137615 |
| exon | 138042 | 138176 |
| exon | 138435 | 138604 |
| exon | 138686 | 138837 |
| exon | 139320 | 139351 |
| exon | 140491 | 140551 |
| exon | 140694 | 140716 |
| exon | 142353 | 142487 |
| exon | 144610 | 146049 |
| CDS | 132854 | 133080 |
| CDS | 134810 | 134891 |
| CDS | 135695 | 135957 |
| CDS | 137534 | 137615 |
| CDS | 138042 | 138176 |
| CDS | 138435 | 138604 |
| CDS | 138686 | 138837 |
| CDS | 139320 | 139351 |
| CDS | 140491 | 140551 |
| CDS | 140694 | 140716 |
| CDS | 142353 | 142487 |
| CDS | 144610 | 145296 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 147 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0019901 | protein kinase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.