Annotation of co-expression genes

PH01002545G0170's details annotation

1.Annotation

ICBR annotation: jmjC domain containing protein, expressed

Blast result AT5G46910 : 2.00E-111
Blast annotation: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

2.Location

Scaffold: PH01002545
Strand: -

RegionStartEnd
gene8912095189
mRNA8912095189
exon8912090041
exon9039390422
exon9114291426
exon9151491866
exon9194692350
exon9266392745
exon9284992928
exon9300593058
exon9350893727
exon9381493970
exon9461495189
CDS8966490041
CDS9039390422
CDS9114291426
CDS9151491866
CDS9194692350
CDS9266392745
CDS9284992928
CDS9300593058
CDS9350893727
CDS9381493970
CDS9461494869

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Jumonji

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02375.16JmjN5991
PF02373.21JmjC235284
PF02928.15zf-C5HC2393445

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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