Annotation of co-expression genes

PH01002545G0230's details annotation

1.Annotation

ICBR annotation: ubiquitin family protein, putative, expressed

Blast result AT5G20620 : 0.00E+00
Blast annotation: ubiquitin 4

2.Location

Scaffold: PH01002545
Strand: +

RegionStartEnd
gene145458154920
mRNA145458154920
exon145458151189
exon152748152767
exon153390154920
CDS149485151189
CDS152748152767
CDS153390154541

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000821CMGC_CDKL-Os (from iTAK)
barrier_septum_assembly

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01926.22MMR_HSR1413524
PF00240.22ubiquitin578649
PF00240.22ubiquitin654725
PF00240.22ubiquitin730801
PF00240.22ubiquitin806877
PF00240.22ubiquitin882953

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0000917barrier septum assembly
GO:0005515protein binding
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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