PH01002550G0210's details annotation
1.Annotation
ICBR annotation: T-complex protein, putative, expressed
Blast result AT3G02530 : 6.00E-123
Blast annotation: TCP-1/cpn60 chaperonin family protein
2.Location
Scaffold: PH01002550
Strand: +
| Region | Start | End |
| gene | 124882 | 129476 |
| mRNA | 124882 | 129476 |
| exon | 124882 | 125439 |
| exon | 125902 | 125965 |
| exon | 126015 | 126198 |
| exon | 128429 | 128580 |
| exon | 128674 | 128721 |
| exon | 128815 | 128907 |
| exon | 129157 | 129476 |
| CDS | 125306 | 125439 |
| CDS | 125902 | 125965 |
| CDS | 126015 | 126198 |
| CDS | 128429 | 128580 |
| CDS | 128674 | 128721 |
| CDS | 128815 | 128907 |
| CDS | 129157 | 129315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00118.23 | Cpn60_TCP1 | 29 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0044267 | cellular protein metabolic process |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.