PH01002550G0230's details annotation
1.Annotation
ICBR annotation: T-complex protein, putative, expressed
Blast result AT3G02530 : 5.10E-98
Blast annotation: TCP-1/cpn60 chaperonin family protein
2.Location
Scaffold: PH01002550
Strand: +
| Region | Start | End |
| gene | 133940 | 136301 |
| mRNA | 133940 | 136301 |
| exon | 133940 | 134052 |
| exon | 134135 | 134221 |
| exon | 134702 | 134906 |
| exon | 134992 | 135086 |
| exon | 135522 | 135590 |
| exon | 135870 | 136301 |
| CDS | 133987 | 134052 |
| CDS | 134135 | 134221 |
| CDS | 134702 | 134906 |
| CDS | 134992 | 135086 |
| CDS | 135522 | 135590 |
| CDS | 135870 | 136043 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00118.23 | Cpn60_TCP1 | 3 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0044267 | cellular protein metabolic process |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.