PH01002552G0050's details annotation
1.Annotation
ICBR annotation: ESP4, putative, expressed
Blast result AT1G27595 : 3.00E-156
Blast annotation: -
2.Location
Scaffold: PH01002552
Strand: +
| Region | Start | End |
| gene | 31934 | 53787 |
| mRNA | 31934 | 53787 |
| exon | 31934 | 33817 |
| exon | 34604 | 34710 |
| exon | 36568 | 36727 |
| exon | 38317 | 38409 |
| exon | 39144 | 39236 |
| exon | 39507 | 39609 |
| exon | 39702 | 39864 |
| exon | 40290 | 40482 |
| exon | 41089 | 41226 |
| exon | 41356 | 41943 |
| exon | 42018 | 42605 |
| exon | 42790 | 42858 |
| exon | 43646 | 43759 |
| exon | 43853 | 44095 |
| exon | 44603 | 44743 |
| exon | 46166 | 46333 |
| exon | 46577 | 46687 |
| exon | 46777 | 46860 |
| exon | 46973 | 47020 |
| exon | 47951 | 48025 |
| exon | 49853 | 49948 |
| exon | 50398 | 50469 |
| exon | 50833 | 50877 |
| exon | 51372 | 51455 |
| exon | 51548 | 51662 |
| exon | 52885 | 53787 |
| CDS | 33581 | 33817 |
| CDS | 34604 | 34710 |
| CDS | 36568 | 36727 |
| CDS | 38317 | 38409 |
| CDS | 39144 | 39236 |
| CDS | 39507 | 39609 |
| CDS | 39702 | 39864 |
| CDS | 40290 | 40482 |
| CDS | 41089 | 41226 |
| CDS | 41356 | 41943 |
| CDS | 42018 | 42605 |
| CDS | 42790 | 42858 |
| CDS | 43646 | 43759 |
| CDS | 43853 | 44095 |
| CDS | 44603 | 44743 |
| CDS | 46166 | 46333 |
| CDS | 46577 | 46687 |
| CDS | 46777 | 46860 |
| CDS | 46973 | 47020 |
| CDS | 47951 | 48025 |
| CDS | 49853 | 49948 |
| CDS | 50398 | 50469 |
| CDS | 50833 | 50877 |
| CDS | 51372 | 51455 |
| CDS | 51548 | 51662 |
| CDS | 52885 | 53066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000149 | SET Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) GTnc GlycosylTransferases mitochondrial inner membrane, exocyst, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11935.7 | DUF3453 | 143 | 198 |
| PF11935.7 | DUF3453 | 212 | 382 |
| PF12295.7 | Symplekin_C | 1132 | 1205 |
| PF12295.7 | Symplekin_C | 1206 | 1283 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | symplekin | ko03015 | K06100 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.