PH01002561G0100's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT5G60710 : 3.00E-152
Blast annotation: Zinc finger (C3HC4-type RING finger) family protein
2.Location
Scaffold: PH01002561
Strand: -
| Region | Start | End |
| gene | 45510 | 52217 |
| mRNA | 45510 | 52217 |
| exon | 45510 | 47436 |
| exon | 49945 | 52217 |
| CDS | 45544 | 47436 |
| CDS | 49945 | 50148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17123.4 | zf-RING_11 | 71 | 100 |
| PF00092.27 | VWA | 244 | 420 |
| PF14624.5 | Vwaint | 591 | 659 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.