PH01002564G0070's details annotation
1.Annotation
ICBR annotation: carboxyl-terminal peptidase, putative, expressed
Blast result AT3G13510 : 0.00E+00
Blast annotation: Protein of Unknown Function (DUF239)
2.Location
Scaffold: PH01002564
Strand: -
| Region | Start | End |
| gene | 38455 | 45613 |
| mRNA | 38455 | 45613 |
| exon | 38455 | 39129 |
| exon | 39729 | 39875 |
| exon | 40037 | 40090 |
| exon | 40450 | 40614 |
| exon | 40720 | 40971 |
| exon | 41074 | 41160 |
| exon | 42027 | 45613 |
| CDS | 38752 | 39129 |
| CDS | 39729 | 39875 |
| CDS | 40037 | 40090 |
| CDS | 40450 | 40614 |
| CDS | 40720 | 40971 |
| CDS | 41074 | 41160 |
| CDS | 42027 | 42224 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000099 | protein dephosphorylation, protein serine/threonine phosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14365.5 | Neprosin_AP | 64 | 184 |
| PF03080.14 | Neprosin | 197 | 419 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.