PH01002571G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G43822 : 9.10E-22
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01002571
Strand: +
| Region | Start | End |
| gene | 119775 | 124786 |
| mRNA | 119775 | 124786 |
| exon | 119775 | 121439 |
| exon | 121739 | 121857 |
| exon | 121975 | 122035 |
| exon | 122576 | 122679 |
| exon | 122818 | 122882 |
| exon | 124059 | 124786 |
| CDS | 121308 | 121439 |
| CDS | 121739 | 121857 |
| CDS | 121975 | 122035 |
| CDS | 122576 | 122679 |
| CDS | 122818 | 122882 |
| CDS | 124059 | 124327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000131 | GT13 GlycosylTransferases vacuolar_proton-transporting_V-type_ATPase,_V0_domain Golgi membrane, proton-transporting V-type ATPase, V0 domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15011.5 | CK2S | 8 | 108 |
| PF00141.22 | peroxidase | 164 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.