PH01002582G0230's details annotation
1.Annotation
ICBR annotation: HD domain containing protein 2, putative, expressed
Blast result AT1G17330 : 3.10E-59
Blast annotation: Metal-dependent phosphohydrolase
2.Location
Scaffold: PH01002582
Strand: -
| Region | Start | End |
| gene | 153916 | 156826 |
| mRNA | 153916 | 156826 |
| exon | 153916 | 154631 |
| exon | 155385 | 155483 |
| exon | 155981 | 156081 |
| exon | 156238 | 156256 |
| exon | 156363 | 156393 |
| exon | 156499 | 156826 |
| CDS | 154369 | 154631 |
| CDS | 155385 | 155483 |
| CDS | 155981 | 156081 |
| CDS | 156238 | 156256 |
| CDS | 156363 | 156393 |
| CDS | 156499 | 156669 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000588 | lipid catabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01966.21 | HD | 31 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008081 | phosphoric diester hydrolase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.