Annotation of co-expression genes

PH01002586G0010's details annotation

1.Annotation

ICBR annotation: OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed

Blast result AT4G27080 : 2.00E-121
Blast annotation: PDI-like 5-4

2.Location

Scaffold: PH01002586
Strand: +

RegionStartEnd
gene1065617197
mRNA1065617197
exon1065611507
exon1198812078
exon1273612830
exon1312513173
exon1399314177
exon1451314570
exon1484814888
exon1499015064
exon1560615662
exon1579115857
exon1609516241
exon1635116575
exon1670616867
exon1695417197
CDS1146711507
CDS1198812078
CDS1273612830
CDS1312513173
CDS1399314177
CDS1451314570
CDS1484814888
CDS1499015064
CDS1560615662
CDS1579115857
CDS1609516241
CDS1635116575
CDS1670616867
CDS1695417052

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001264cis-Golgi network,
Rab GDP-dissociation inhibitor activity,
C2H2 Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001548protein methyltransferase activity,
proton-transporting ATP synthase complex, catalytic core F(1),
clathrin adaptor complex,
proton-transporting ATPase activity, rotational mechanism,
O-methyltransferase activity,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
protein methylation,
ATP synthesis coupled proton transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13850.5ERGIC_N797
PF00085.19Thioredoxin146243

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.