PH01002606G0320's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT5G32450 : 2.50E-55
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01002606
Strand: -
| Region | Start | End |
| gene | 187385 | 191533 |
| mRNA | 187385 | 191533 |
| exon | 187385 | 187662 |
| exon | 187792 | 187915 |
| exon | 188154 | 188491 |
| exon | 189941 | 191533 |
| CDS | 187555 | 187662 |
| CDS | 187792 | 187915 |
| CDS | 188154 | 188491 |
| CDS | 189941 | 189964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000370 | small GTPase mediated signal transduction, |
| coexpression network | CFinderM000755 | ceramide metabolic process, tubulin complex assembly, Sphingolipid_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, serine-type peptidase activity, microtubule, |
| coexpression network | CFinderM001138 | AP-3_adaptor_complex ceramide metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, Sphingolipid_metabolism phosphate-containing compound metabolic process, inorganic diphosphatase activity, protein transporter activity, Oxidative_phosphorylation membrane coat, |
| coexpression network | CFinderM001139 | AP-3_adaptor_complex membrane coat, acid-amino acid ligase activity, protein transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.