PH01002611G0180's details annotation
1.Annotation
ICBR annotation: mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed
Blast result AT3G16480 : 2.00E-148
Blast annotation: mitochondrial processing peptidase alpha subunit
2.Location
Scaffold: PH01002611
Strand: -
| Region | Start | End |
| gene | 101977 | 107889 |
| mRNA | 101977 | 107889 |
| exon | 101977 | 102124 |
| exon | 102213 | 102325 |
| exon | 103199 | 103248 |
| exon | 103324 | 103394 |
| exon | 103480 | 103552 |
| exon | 103921 | 104015 |
| exon | 104160 | 104250 |
| exon | 104342 | 104422 |
| exon | 104521 | 104688 |
| exon | 104782 | 104949 |
| exon | 105034 | 105330 |
| exon | 105422 | 105667 |
| exon | 106815 | 106976 |
| exon | 107123 | 107889 |
| CDS | 102072 | 102124 |
| CDS | 102213 | 102325 |
| CDS | 103199 | 103248 |
| CDS | 103324 | 103394 |
| CDS | 103480 | 103552 |
| CDS | 103921 | 104015 |
| CDS | 104160 | 104250 |
| CDS | 104342 | 104422 |
| CDS | 104521 | 104688 |
| CDS | 104782 | 104949 |
| CDS | 105034 | 105330 |
| CDS | 105422 | 105667 |
| CDS | 106815 | 106976 |
| CDS | 107123 | 107590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00675.19 | Peptidase_M16 | 286 | 429 |
| PF05193.20 | Peptidase_M16_C | 437 | 627 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.