PH01002618G0050's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT2G15820 : 0.00E+00
Blast annotation: endonucleases
2.Location
Scaffold: PH01002618
Strand: -
| Region | Start | End |
| gene | 20283 | 23951 |
| mRNA | 20283 | 23951 |
| exon | 20283 | 22156 |
| exon | 22327 | 23951 |
| CDS | 20288 | 22156 |
| CDS | 22327 | 22821 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 188 | 210 |
| PF13812.5 | PPR_3 | 357 | 412 |
| PF01535.19 | PPR | 478 | 501 |
| PF01535.19 | PPR | 509 | 536 |
| PF03161.12 | LAGLIDADG_2 | 573 | 739 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004519 | endonuclease activity |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.