PH01002618G0290's details annotation
1.Annotation
ICBR annotation: growth-regulating factor, putative, expressed
Blast result AT3G13960 : 2.60E-40
Blast annotation: growth-regulating factor 5
2.Location
Scaffold: PH01002618
Strand: +
| Region | Start | End |
| gene | 154780 | 159948 |
| mRNA | 154780 | 159948 |
| exon | 154780 | 155038 |
| exon | 155155 | 155372 |
| exon | 156328 | 156729 |
| exon | 157233 | 157410 |
| exon | 158645 | 159069 |
| exon | 159158 | 159948 |
| CDS | 154935 | 155038 |
| CDS | 155155 | 155372 |
| CDS | 156328 | 156729 |
| CDS | 157233 | 157410 |
| CDS | 158645 | 159069 |
| CDS | 159158 | 159165 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRF |
| Transcription_Regulator(from PlantTFDB) | GRF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08880.10 | QLQ | 58 | 92 |
| PF08879.9 | WRC | 120 | 162 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.