PH01002624G0160's details annotation
1.Annotation
ICBR annotation: tobamovirus multiplication protein, putative, expressed
Blast result AT1G14530 : 1.60E-91
Blast annotation: Protein of unknown function (DUF1084)
2.Location
Scaffold: PH01002624
Strand: +
| Region | Start | End |
| gene | 123178 | 128249 |
| mRNA | 123178 | 128249 |
| exon | 123178 | 123394 |
| exon | 125798 | 125888 |
| exon | 125978 | 126030 |
| exon | 126116 | 126280 |
| exon | 126733 | 126851 |
| exon | 127353 | 127470 |
| exon | 127559 | 127636 |
| exon | 127785 | 128249 |
| CDS | 123284 | 123394 |
| CDS | 125798 | 125888 |
| CDS | 125978 | 126030 |
| CDS | 126116 | 126280 |
| CDS | 126733 | 126851 |
| CDS | 127353 | 127470 |
| CDS | 127559 | 127636 |
| CDS | 127785 | 127883 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06454.10 | DUF1084 | 6 | 274 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.