PH01002624G0240's details annotation
1.Annotation
ICBR annotation: LIM domain-containing protein, putative, expressed
Blast result AT4G36860 : 1.80E-69
Blast annotation: LIM domain-containing protein
2.Location
Scaffold: PH01002624
Strand: +
| Region | Start | End |
| gene | 181997 | 191329 |
| mRNA | 181997 | 191329 |
| exon | 181997 | 184009 |
| exon | 184135 | 184417 |
| exon | 186637 | 186698 |
| exon | 187242 | 187331 |
| exon | 187603 | 187634 |
| exon | 188167 | 191329 |
| CDS | 183809 | 184009 |
| CDS | 184135 | 184417 |
| CDS | 186637 | 186698 |
| CDS | 187242 | 187331 |
| CDS | 187603 | 187634 |
| CDS | 188167 | 189946 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09531.9 | Ndc1_Nup | 51 | 161 |
| PF00412.21 | LIM | 672 | 727 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.