PH01002627G0310's details annotation
1.Annotation
ICBR annotation: membrane protein, putative, expressed
Blast result AT3G25290 : 5.00E-105
Blast annotation: Auxin-responsive family protein
2.Location
Scaffold: PH01002627
Strand: +
| Region | Start | End |
| gene | 182566 | 184557 |
| mRNA | 182566 | 184557 |
| exon | 182566 | 183447 |
| exon | 183693 | 183947 |
| exon | 184090 | 184557 |
| CDS | 182974 | 183447 |
| CDS | 183693 | 183947 |
| CDS | 184090 | 184389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04526.12 | DUF568 | 88 | 189 |
| PF03188.15 | Cytochrom_B561 | 211 | 336 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.