PH01002630G0010's details annotation
1.Annotation
ICBR annotation: auxin efflux carrier component, putative
Blast result AT5G16530 : 1.30E-34
Blast annotation: Auxin efflux carrier family protein
2.Location
Scaffold: PH01002630
Strand: +
| Region | Start | End |
| gene | 4564 | 7667 |
| mRNA | 4564 | 7667 |
| exon | 4564 | 5205 |
| exon | 5852 | 5977 |
| exon | 7245 | 7321 |
| exon | 7419 | 7667 |
| CDS | 4816 | 5205 |
| CDS | 5852 | 5977 |
| CDS | 7245 | 7321 |
| CDS | 7419 | 7488 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000136 | CPP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03547.17 | Mem_trans | 1 | 130 |
| PF03547.17 | Mem_trans | 143 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.