PH01002633G0060's details annotation
1.Annotation
ICBR annotation: mitosis protein dim1, putative, expressed
Blast result AT3G24730 : 4.80E-38
Blast annotation: mRNA splicing factor, thioredoxin-like U5 snRNP
2.Location
Scaffold: PH01002633
Strand: +
| Region | Start | End |
| gene | 39966 | 50355 |
| mRNA | 39966 | 50355 |
| exon | 39966 | 40944 |
| exon | 41810 | 41967 |
| exon | 43904 | 43970 |
| exon | 44607 | 44875 |
| exon | 46020 | 46092 |
| exon | 46245 | 46559 |
| exon | 47854 | 48204 |
| exon | 49093 | 49335 |
| exon | 50136 | 50355 |
| CDS | 40810 | 40944 |
| CDS | 41810 | 41967 |
| CDS | 43904 | 43970 |
| CDS | 44607 | 44875 |
| CDS | 46020 | 46092 |
| CDS | 46245 | 46559 |
| CDS | 47854 | 48204 |
| CDS | 49093 | 49335 |
| CDS | 50136 | 50252 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02966.15 | DIM1 | 5 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005681 | spliceosomal complex |
| GO:0007067 | mitosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.