PH01002635G0220's details annotation
1.Annotation
ICBR annotation: RNA polymerase Rpb7, N-terminal domain containing protein, expressed
Blast result AT2G23930 : 1.10E-16
Blast annotation: probable small nuclear ribonucleoprotein G
2.Location
Scaffold: PH01002635
Strand: +
| Region | Start | End |
| gene | 189717 | 195377 |
| mRNA | 189717 | 195377 |
| exon | 189717 | 190162 |
| exon | 190498 | 190948 |
| exon | 193685 | 193782 |
| exon | 193916 | 194067 |
| exon | 194320 | 194429 |
| exon | 195022 | 195156 |
| exon | 195194 | 195377 |
| CDS | 189996 | 190162 |
| CDS | 190498 | 190948 |
| CDS | 193685 | 193782 |
| CDS | 193916 | 194067 |
| CDS | 194320 | 194429 |
| CDS | 195022 | 195156 |
| CDS | 195194 | 195367 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000687 | Ubiquitin_mediated_proteolysis GH35 Glycoside_Hydrolases cullin-RING ubiquitin ligase complex, Nucleotide_excision_repair metallocarboxypeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01423.21 | LSM | 331 | 371 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.