PH01002642G0160's details annotation
1.Annotation
ICBR annotation: peptidyl-prolyl isomerase, putative, expressed
Blast result AT3G25230 : 9.00E-168
Blast annotation: rotamase FKBP 1
2.Location
Scaffold: PH01002642
Strand: +
| Region | Start | End |
| gene | 126141 | 128804 |
| mRNA | 126141 | 128804 |
| exon | 126141 | 126499 |
| exon | 127210 | 127296 |
| exon | 127397 | 127657 |
| exon | 127744 | 127818 |
| exon | 127907 | 127987 |
| exon | 128089 | 128283 |
| exon | 128382 | 128804 |
| CDS | 126283 | 126499 |
| CDS | 127210 | 127296 |
| CDS | 127397 | 127657 |
| CDS | 127744 | 127818 |
| CDS | 127907 | 127987 |
| CDS | 128089 | 128283 |
| CDS | 128382 | 128722 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000880 | beta-amylase activity, polysaccharide catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00254.27 | FKBP_C | 64 | 153 |
| PF00254.27 | FKBP_C | 180 | 270 |
| PF00254.27 | FKBP_C | 295 | 390 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.