PH01002645G0160's details annotation
1.Annotation
ICBR annotation: hydrolase, NUDIX family protein, expressed
Blast result AT5G20070 : 7.80E-58
Blast annotation: nudix hydrolase homolog 19
2.Location
Scaffold: PH01002645
Strand: -
| Region | Start | End |
| gene | 114255 | 117799 |
| mRNA | 114255 | 117799 |
| exon | 114255 | 115137 |
| exon | 115390 | 115482 |
| exon | 115715 | 115814 |
| exon | 117154 | 117799 |
| CDS | 114881 | 115137 |
| CDS | 115390 | 115482 |
| CDS | 115715 | 115814 |
| CDS | 117154 | 117180 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00293.27 | NUDIX | 10 | 88 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Nicotinate and nicotinamide metabolism | NAD+ diphosphatase [EC:3.6.1.22] | ko00760 | K03426 |
| Peroxisome | NAD+ diphosphatase [EC:3.6.1.22] | ko04146 | K03426 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.