PH01002652G0230's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT1G16060 : 1.90E-65
Blast annotation: ARIA-interacting double AP2 domain protein
2.Location
Scaffold: PH01002652
Strand: +
| Region | Start | End |
| gene | 175953 | 178529 |
| mRNA | 175953 | 178529 |
| exon | 175953 | 176241 |
| exon | 176349 | 176431 |
| exon | 176707 | 176795 |
| exon | 177263 | 177336 |
| exon | 177507 | 177557 |
| exon | 177666 | 177742 |
| exon | 178393 | 178529 |
| CDS | 176060 | 176241 |
| CDS | 176349 | 176431 |
| CDS | 176707 | 176795 |
| CDS | 177263 | 177336 |
| CDS | 177507 | 177557 |
| CDS | 177666 | 177742 |
| CDS | 178393 | 178514 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-AP2 |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 55 | 110 |
| PF00847.19 | AP2 | 153 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.