PH01002656G0020's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT5G16610 : 6.40E-85
Blast annotation: -
2.Location
Scaffold: PH01002656
Strand: +
| Region | Start | End |
| gene | 13345 | 25581 |
| mRNA | 13345 | 25581 |
| exon | 13345 | 14428 |
| exon | 15896 | 16266 |
| exon | 16342 | 16390 |
| exon | 18333 | 18510 |
| exon | 18600 | 18931 |
| exon | 20313 | 20403 |
| exon | 20455 | 20695 |
| exon | 20729 | 20799 |
| exon | 20864 | 20898 |
| exon | 21577 | 22189 |
| exon | 22345 | 22465 |
| exon | 22525 | 22588 |
| exon | 22677 | 22799 |
| exon | 23573 | 23674 |
| exon | 23759 | 23850 |
| exon | 23941 | 24094 |
| exon | 24943 | 25581 |
| CDS | 14354 | 14428 |
| CDS | 15896 | 16266 |
| CDS | 16342 | 16390 |
| CDS | 18333 | 18510 |
| CDS | 18600 | 18931 |
| CDS | 20313 | 20403 |
| CDS | 20455 | 20695 |
| CDS | 20729 | 20799 |
| CDS | 20864 | 20898 |
| CDS | 21577 | 22189 |
| CDS | 22345 | 22465 |
| CDS | 22525 | 22588 |
| CDS | 22677 | 22799 |
| CDS | 23573 | 23674 |
| CDS | 23759 | 23850 |
| CDS | 23941 | 24094 |
| CDS | 24943 | 25209 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 171 | 299 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.