PH01002667G0220's details annotation
1.Annotation
ICBR annotation: ankyrin repeat domain-containing protein 28, putative, expressed
Blast result AT4G19150 : 9.70E-57
Blast annotation: Ankyrin repeat family protein
2.Location
Scaffold: PH01002667
Strand: +
| Region | Start | End |
| gene | 171309 | 175654 |
| mRNA | 171309 | 175654 |
| exon | 171309 | 171810 |
| exon | 173948 | 174509 |
| exon | 174738 | 174804 |
| exon | 175015 | 175654 |
| CDS | 171629 | 171810 |
| CDS | 173948 | 174509 |
| CDS | 174738 | 174804 |
| CDS | 175015 | 175376 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000597 | GH100 Glycoside_Hydrolases RLK-Pelle_SD-2b (from iTAK) |
| coexpression network | CFinderM000598 | DDT Transcription_Regulator(from iTAK) Phosphatidylinositol_signaling_system Endocytosis protein transport, |
| coexpression network | CFinderM001207 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity regulation of transcription, DNA-dependent, WRKY Transcription_Regulator(from PlantTFDB) hydroxymethylglutaryl-CoA lyase activity, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 28 | 85 |
| PF12796.6 | Ank_2 | 91 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.