Annotation of co-expression genes

PH01002673G0200's details annotation

1.Annotation

ICBR annotation: microtubule associated protein, putative, expressed

Blast result AT1G27920 : 3.00E-121
Blast annotation: microtubule-associated protein 65-8

2.Location

Scaffold: PH01002673
Strand: -

RegionStartEnd
gene152104158383
mRNA152104158383
exon152104152807
exon154374154447
exon154545154632
exon154737154888
exon154988155147
exon155257155412
exon156299156517
exon156607156852
exon157050157142
exon157229157333
exon157874158383
CDS152289152807
CDS154374154447
CDS154545154632
CDS154737154888
CDS154988155147
CDS155257155412
CDS156299156517
CDS156607156852
CDS157050157142
CDS157229157333
CDS157874158074

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03999.11MAP65_ASE1104595

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000226microtubule cytoskeleton organization
GO:0000910cytokinesis
GO:0008017microtubule binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.