Annotation of co-expression genes

PH01002674G0050's details annotation

1.Annotation

ICBR annotation: microtubule associated protein, putative, expressed

Blast result AT2G01910 : 3.00E-159
Blast annotation: Microtubule associated protein (MAP65/ASE1) family protein

2.Location

Scaffold: PH01002674
Strand: +

RegionStartEnd
gene2191528087
mRNA2191528087
exon2191523017
exon2370423907
exon2443724727
exon2515325368
exon2570225861
exon2595226103
exon2630526392
exon2646926542
exon2662326697
exon2678628087
CDS2294923017
CDS2370423907
CDS2443724727
CDS2515325368
CDS2570225861
CDS2595226103
CDS2630526392
CDS2646926542
CDS2662326697
CDS2678627109

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000243Alanine,_aspartate_and_glutamate_metabolism
adenylosuccinate synthase activity,
purine nucleotide biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
RNA-dependent DNA replication,
Purine_metabolism
coexpression networkCFinderM001039acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03999.11MAP65_ASE149260
PF03999.11MAP65_ASE1257496

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000226microtubule cytoskeleton organization
GO:0000910cytokinesis
GO:0008017microtubule binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.