PH01002676G0260's details annotation
1.Annotation
ICBR annotation: stress responsive A/B Barrel domain containing protein, expressed
Blast result AT3G17210 : 2.10E-39
Blast annotation: heat stable protein 1
2.Location
Scaffold: PH01002676
Strand: +
| Region | Start | End |
| gene | 169334 | 172209 |
| mRNA | 169334 | 172209 |
| exon | 169334 | 170948 |
| exon | 171917 | 172209 |
| CDS | 170800 | 170948 |
| CDS | 171917 | 172103 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000757 | glutathione metabolic process, Cyanoamino_acid_metabolism Arachidonic_acid_metabolism Taurine_and_hypotaurine_metabolism heme binding, gamma-glutamyltransferase activity, Glutathione_metabolism response to oxidative stress, oxidation-reduction process, |
| coexpression network | CFinderM001154 | clathrin_coat RLK-Pelle_LysM (from iTAK) clathrin_coat_assembly Trihelix Transcription_Regulator(from PlantTFDB) cellular amino acid biosynthetic process, RLK-Pelle_SD-2b (from iTAK) clathrin_binding 1-phosphatidylinositol_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07876.11 | Dabb | 11 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.